Example 2: Biphasic Systems

Example 2: Building Biphasic Systems

MakeThe original tutorial was to make a heterogeneous biphasic system composed of hydrophobic (cyclohexane) and hydrophilic (water) layers. 

ThisHere examplewe illustratesare thegoing procedureto use benzene to replace cyclohexane as a demostration of makinghow to use CHARMM-GUI to make a new moleculeligand.

that

As thewe covered before, Gromacs doesn'tsimulations know.

require

Preparetwo the hydrophobic layer