Books

A simple example

A simple example of pKa titration of lysozyme.

Calculate Em of heme in Cytochrome

Compute hydrogen bond network

Define "Hot" Spot to Make More Rotamers in MCCE

An example to let MCCE make more rotamers at the site of interest

Finding Protein Loading Sites

Learn how MCCE helped Raihan Uddin in finding Protein Loading Sites.

Gromacs Quick Start

Index

Install MCCE

Download and installation procedure

MCCE Commands

MCCE commands explanation and examples.

MCCE How Tos

Questions and Answers related to MCCE

MCCE Hydrogen Bond Characterization

Gehan Ranepura shares his microstate tool, ms_hbnets (steps 1-4), used to characterize Hydrogen Bond networks.

MCCE Tutorial - 4LZT

A full example of a simulted pH titration of Lysozyme to find pKas of titratable residues.

Microstate Analysis Library

Documentation and examples using the microstate analysis library

Microstate Tools Tutorial

Learn about the tools MCCE has for analyzing Microstate distributions.

Other HOW-TOs

Questions and Answers not directly related to MCCE

p_batch tutorial

Run multiple proteins concurrently with MCCE

Photosystem II Analysis

José Ortiz-Soto talks about how MCCE helped him learn about Photosystem II.

Proton Loading Sites in Complex I

Koreena Sookhai talks about how using MCCE helped her identify protein loading sites.