Books

A simple example

A simple example of pKa titration of lysozyme.

Define "Hot" Spot to Make More Rotamers in MCCE

An example to let MCCE make more rotamers at the site of interest

Gromacs Quick Start

Install MCCE

Download and installation procedure

MCCE Commands

MCCE commands explanation and examples.

MCCE How Tos

Questions and Answers related to MCCE

MCCE Hydrogen Bond Characterization

Gehan Ranepura shares his microstate tool, ms_hbnets (steps 1-4), used to characterize Hydrogen Bond networks.

MCCE Tutorial - 4LZT

A full example of a simulted pH titration of Lysozyme to find pKas of titratable residues.

Microstate Analysis Library

Documentation and examples using the microstate analysis library

Microstate Tools Tutorial

Learn about the tools MCCE has for analyzing Microstate distributions.

Other HOW-TOs

Questions and Answers not directly related to MCCE

p_batch tutorial

Run multiple proteins concurrently with MCCE

Photosystem II Analysis

Proton Loading Sites in Complex I

Koreena Sookhai talks about how using MCCE helped her identify protein loading sites.

Results

Findings about MCCE and its settings

What is MCCE?

A short introduction of MCCE and refernces