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Junjun Mao
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Example 2: Biphasic Systems
Example 2: Building Biphasic Systems Studay system The original tutorial was to make a hetero...
Example 1: Lysozyme
Example 1: Lysozyme In this example, we are going to use hen egg white lysozyme (PDB ID 1AKI) to...
Gromacs Server
GROMACS Server Official Documentation: https://manual.gromacs.org/current/user-guide/index.ht...
Microstate Analysis Library Reference
Microstate Analysis Library Reference Import library Suppose the ms_analysis.py is in the cur...
How to add rotamer making rules to parameter file?
If a residue or a cofactor has rotatable single bond, the user needs to define the rotation rule ...
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Gromacs Quick Start
Microstate Analysis Library
Documentation and example on using the microstate analysis library
MCCE How Tos
Questions and Answers related to MCCE
Define "Hot" Spot to Make More Rotamers in MCCE
An example to let MCCE make more rotamers at the site of interest
Calculate pKas of Lysozyme
A full example of a simulted pH titration of Lysozyme to find pKas of titratable residues.