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How do I run multiple proteins at once? p_batch and pro_batch
p_batch is a program included in MCCE, under the folder MCCE_bin. It accepts a directory containi...
Custom MCCE Runs and submit_shell
Default MCCE runs (run_mcce4) By default, each step of MCCE has certain parameters set to it. Fo...
MCCE Output Files
As part of the standard four steps, MCCE produces a number of files associated with the initial p...
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How does changing MCCE's parameters change accuracy? (under construction)
MCCE offers a wide range of customizable parameter that influence the accuracy of its pKa predict...
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Finding Protein Loading Sites
Learn how MCCE helped Raihan Uddin in finding Protein Loading Sites.
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Findings about MCCE and its settings
Photosystem II Analysis
José Ortiz-Soto talks about how MCCE helped him learn about Photosystem II.
MCCE Hydrogen Bond Characterization
Gehan Ranepura shares his microstate tool, ms_hbnets (steps 1-4), used to characterize Hydrogen B...
Proton Loading Sites in Complex I
Koreena Sookhai talks about how using MCCE helped her identify protein loading sites.