MCCE Documentation

MCCE Documentation

What is MCCE?

Multi-Conformation Continuum Electrostatics - MCCE

MCCE Mechanism

MCCE Success Stories

Proton Loading Sites in Complex I

MCCE Hydrogen Bond Characterization

Photosystem II Analysis

Quick Start

Install MCCE

A simple MCCE example of pH titration

Turtorials

Calculate pKas of Lysozyme - a 4-step process

Calculate Em of heme in Cytochrome

Compute hydrogen bond network

Sampling more rotamers at "hot" spots

Gromacs Quick Start

Gromacs Server

Example 1: Lysozyme

Example 2: Biphasic Systems

Microstate Tools Tutorial

What is a microstate?

Tautomeric Charge Microstates

Run MCCE on Multiple PDBs at Once

Knowledgebase

MCCE Commands

MCCE Program Run and Debug

MCCE Data Analysis

MCCE Tools

MCCE How Tos

How to make a new topology file?

How to add rotamer making rules to parameter file?

Other HOW-TOs

How to install WSL (Windows Subsystem Linux)

How to contribute code to MCCE

Microstate Analysis Library

Microstate Analysis Library Reference

Interprete MCCE Results

How does changing MCCE's parameters change accuracy?

How to break down the energy of a residue ionization?