MCCE Documentation

MCCE Documentation

What is MCCE?

• Multi-Conformation Continuum Electrostatics - MCCE

• MCCE Mechanism

MCCE Success Stories

• Proton Loading Sites in Complex I

• MCCE Hydrogen Bond Characterization

• Photosystem II Analysis

Quick Start

• Install MCCE

• A simple MCCE example of pH titration

Turtorials

• Calculate pKas of Lysozyme - a 4-step process

• Calculate Em of heme in Cytochrome

• Compute hydrogen bond network

• Sampling more rotamers at "hot" spots

• Gromacs Quick Start

  • Gromacs Server

  • Example 1: Lysozyme

  • Example 2: Biphasic Systems

• Microstate Tools Tutorial

  • What is a microstate?

  • Tautomeric Charge Microstates

• Run MCCE on Multiple PDBs at Once
  

Knowledgebase

• MCCE Commands

  • MCCE Program Run and Debug

  • MCCE Data Analysis

  • MCCE Tools

• MCCE How Tos

  • How to make a new topology file?

  • How to add rotamer making rules to parameter file?

• Other HOW-TOs

  • How to install WSL (Windows Subsystem Linux)

  • How to contribute code to MCCE

• Microstate Analysis Library

  • Microstate Analysis Library Reference

• Interprete MCCE Results

  • How does changing MCCE's parameters change accuracy?

  • How to break down the energy of a residue ionization?